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    Home » Desserts

    Author: Emily Krill | Published: Oct 26, 2019 | Modified: Dec 5, 2021

    Keto Carrot Cake Muffins

    Jump to Recipe

    These Keto Cake Muffins with Cream Cheese Filling are great grab-and-go snacks that have just 3g net carbs each.

    a top down view of a pink muffin pan holding low carb cream cheese filled carrot muffins
    Jump to:
    • 🥕 Are carrots Keto?
    • 🥣 Ingredients
    • 📖 Instructions
    • 🥣 Cream cheese filling
    • 💬 Are these muffins gluten-free?
    • 📋 Recipe
    • Specialty Ingredients 💰

    What’s up docs? 👋

    Are you folks ready for some Keto Cream Cheese Filled Carrot Cake Muffins?  It has been a long week, and I, for one, am ready for a bit of a treat.

    Who's with me?

    a top down view of a Keto cream cheese filled carrot muffin on a green plate

    🥕 Are carrots Keto?

    I can see the Keto Police getting out their whistles.  But before I hear, “Carrots aren’t low carb!”, let me make the case for the carrot, an unfairly maligned vegetable, in my humble opinion.

    So just chill out for a minute Karens.

    7 carrots and a question mark

    Yes, carrots are root vegetables...

    But they actually rank very low on the glycemic index.  And a medium-sized carrot has just 4g net carbs.  This recipe uses one measly carrot, divided by 9 servings, so you are only looking at less than half of a gram of net carbohydrate per muffin.

    That's chump change.

    a hand holds a sugar-free carrot muffin

    🥣 Ingredients

    • cream cheese
    • Swerve Granular
    • vanilla extract
    • coconut flour
    • Isopure protein powder
    • almond flour
    • baking powder
    • pumpkin spice
    • ground ginger
    • salt
    • butter
    • eggs
    • heavy whipping cream
    • grated carrot
    • chopped pecans
    ingredients for gluten free carrot muffins

    📖 Instructions

    1. Beat together the filling ingredients with an electric mixer until smooth. 
    2. Then mix together your dry ingredients. 
    3. Cream together butter, sweetener, and vanilla until light and fluffy. 
    4. Beat an egg into the mixture. 
    5. Beat some of the dry mixture in, then an egg, then the rest of the dry, then an egg. 
    6. Mix in cream and shredded carrot.
    7. Add the muffin batter and cream cheese filling into the wells of a cupcake pan. 
    8. Sprinkle with chopped pecans and bake in a 350 degree F oven for 25-30 minutes.  
    a close up view of a pink muffin pan holding a Keto Carrot Cake Muffin

    🥣 Cream cheese filling

    But how do you get the cream cheese filling to suspend in the middle of the muffins? The batter is thick, so it’s not a problem.  You’ll spoon a layer of the carrot muffin batter into the wells of the muffin pan, add a spoonful of filling in the middle and spoon the remaining batter on top.  Smooth the tops with your fingers and you are good to go.

    💬 Are these muffins gluten-free?

    Yes, they most definitely are. Low carb baked goods are nearly always gluten-free because wheat is off-limits when you are on a Keto diet. This carrot cake muffin recipe uses almond flour, coconut flour, and protein powder for its dry ingredients. So there is no gluten up in here.

    If you like this quick breakfast idea, then you might like my Keto Waffles, Keto Yogurt, Keto Biscuits and Gravy, or Keto Bran Flakes recipes.

    a top down view of a Keto cream cheese filled carrot muffin on a green plate

    And that's about it. 👩‍🍳

    Soon you too will have a batch of delicious low carb carrot cake muffins. These muffins are good and good for you.  And each grab-and-go snack has just 198 calories and 3g net carbs.  So I proudly stand by my Keto carrot cake muffins.

    Bring it on, carrot naysayers! 🥕

    Print

    📋 Recipe

    Keto Carrot Cake Muffins

    a pan of Keto Cream Cheese Filled Carrot Muffins
    Print Recipe

    ★★★★★

    4.9 from 7 reviews

    These cream cheese filled carrot cake Keto muffins are great grab-and-go snacks that have just 3g net carbs each.

    • Author: Emily Krill
    • Prep Time: 10
    • Cook Time: 30
    • Total Time: 40 minutes
    • Yield: 9 muffins 1x
    • Category: Dessert
    • Method: Baked
    • Cuisine: American
    • Diet: Gluten Free

    Ingredients

    Units Scale

    Cream Cheese Filling:

    • 4 oz cream cheese, softened
    • 2 tablespoons Swerve Granular
    • ½ teaspoon vanilla extract

    Muffin Batter:

    • ⅓ cup coconut flour
    • 2 tablespoons Isopure protein powder
    • ⅓ cup almond flour
    • 1 ½ teaspoons baking powder
    • 1 teaspoon pumpkin spice
    • ½ teaspoon ground ginger
    • ¼ teaspoon salt
    • ¼ cup butter, softened
    • 5 tablespoons Swerve Granular
    • 1 teaspoon vanilla extract
    • 3 large eggs
    • 2 tablespoons heavy whipping cream
    • 2 oz (1 medium carrot) grated carrot

    Topping:

    • ¼ cup chopped pecans

     

    Instructions

    Step 1.  Pre-Heat oven to 350 degrees F.  Spray or line a muffin pan.  You can use a large muffin pan (3 inch wide wells) and make 6 muffins, or use a standard muffin pan (2 ½ inch wide wells) and make 9 muffins.pre-heat

    Step 2.  In a medium-sized bowl, use an electric mixer to beat together filling cream cheese, sweetener, and vanilla until smooth.  Refrigerate until you are ready to use it.step 2 beat together the cream cheese filling ingerdients

    Step 3.  In a medium-sized bowl, mix together coconut flour, protein powder, almond flour, baking powder, pumpkin spice, ginger, and salt.step 3 mix together the dry ingredients

    Step 4.  In a large bowl, use an electric mixer to cream together butter, sweetener, and vanilla until light and fluffy, 1-2 minutes.step 5 cream together butter and sweetener

    Step 5.  Beat 1 egg into the butter mixture.  Beat in ⅓ of the dry mixture, then 1 egg, then ⅓ of the dry, then 1 egg, and the remaining dry mixture.step 5 beat in remaining ingredients

    Step 6.  Mix in heavy whipping cream and grated carrot.step 6 mix in cream and carrots

    Step 7.  Fill the wells of the muffin pan halfway up with batter.  Add a spoonful of filling to the middle of each well.  Top with the remaining batter.step 7 fill the wells of the muffin pan

    Step 8.  Sprinkle chopped pecans on top and gently press them into the tops of the batter.step 8 sprinkle nuts on top

    Step 9.  Bake for 25-30 minutes until the tops of the muffins are firm and nuts are lightly browned.step 9 bake the carrot muffins for 25-30 minutes

    Equipment

    silicone cupcake pan

    Silicone Cupcake Pan

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    cooling racks

    Cooling Racks

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    Set of mixing bowls and silicone tools

    Mixing Bowl and Tool Set

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    an electric hand mixer

    Electric Hand Mixer

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    Nutrition

    • Serving Size: 1 muffin
    • Calories: 198
    • Fat: 17
    • Carbohydrates: 6
    • Fiber: 3
    • Protein: 6

    Keywords: Keto Carrot Muffins, Low Carb Carrot Muffins, Cream Cheese Filled Carrot Muffins

    Specialty Ingredients 💰

    swerve granular

    Swerve Granular

    Buy Now →

    Swerve Bundle

    Buy Now →
    coconut flour

    Coconut Flour

    Buy Now →
    almond flour

    Almond Flour

    Buy Now →
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    Reader Interactions

    Comments

    1. Marti says

      March 05, 2021 at 8:56 pm

      Could almond flour be substituted for the coconut flour?

      Reply
      • EmilyKrill says

        March 05, 2021 at 9:00 pm

        No, that won't work. I recommend using a recipe that was designed to be make with almond flour. You can follow the steps in my recipe for the cream cheese center. Here's one that looks good: https://trinakrug.com/carrot-cake-muffins/

        Reply
    2. Renee Garvey says

      February 11, 2021 at 12:04 pm

      Fabulous. Best muffin ever. Thank you.

      ★★★★★

      Reply
      • EmilyKrill says

        February 11, 2021 at 12:53 pm

        Thanks!

        Reply
    3. Zsuzsanna says

      November 05, 2019 at 7:14 pm

      I'm sorry, but I still cannot see how much shredded coconut I need and when and where to put it...
      But even without it, it's delicious!

      ★★★★★

      Reply
      • EmilyKrill says

        November 05, 2019 at 7:44 pm

        Sorry about that! I used shredded coconut in an earlier version of the recipe, so that's why it's in the picture of the ingredients. (You have eagle eyes!) I ended up leaving it out of the recipe, because I thought it made the muffins a bit dry. But if you want to add in some shredded coconut, use 1/4 cup and mix it in with the cream and the grated carrots.

        Reply
    4. Suzanne Holt says

      May 04, 2019 at 1:05 pm

      These muffins are delicious! I can not stop eating them! No complaints whatsoever.

      ★★★★★

      Reply
      • EmilyKrill says

        May 04, 2019 at 1:09 pm

        Excellent! Happy to hear it.

        Reply
    5. Mary H Knight says

      March 20, 2019 at 1:10 am

      Could you use maple syrup instead of swerve. Is swevre a good sweetener?

      ★★★★★

      Reply
      • EmilyKrill says

        March 20, 2019 at 8:38 am

        You really can't substitute maple syrup for Swerve in this recipe. The liquid to dry ingredient ratio would be all off. And if you used maple syrup the muffins wouldn't be low carb. Swerve is a great low carb alternative to sugar though. I use it for all my baked goods because it's got zero calories and zero net carbs. And the taste is the closest thing to real sugar that I've found.

        Reply
    6. Amber says

      January 29, 2019 at 11:13 am

      Favorite keto muffin yet! Nailed it! Thank you

      ★★★★★

      Reply
      • EmilyKrill says

        January 29, 2019 at 11:30 am

        Sure thing! So glad you like it.

        Reply
    7. Bonnie says

      October 25, 2018 at 2:54 pm

      I love me some Clive Owen.

      ★★★★★

      Reply
      • EmilyKrill says

        October 25, 2018 at 9:34 pm

        And how.

        Reply
      • Lynn says

        January 11, 2020 at 9:11 pm

        I substituted sweet n low for swerve. Big mistake-bad aftertaste. Should’ve read comments before making. This tastes very good and I’m sure with the swerve muscle better. But my muffins were a bit dry. Any hints?

        ★★★★

        Reply
        • EmilyKrill says

          January 11, 2020 at 9:58 pm

          You could try adding more cream cheese filling so you get more moistness in each bite.

          Reply
    8. Brenda says

      April 23, 2018 at 2:14 am

      What could I sub for the protein powder and can I leave out the shredded coconut?
      Thanks! These look so yummy!!!

      Reply
      • Emily says

        April 23, 2018 at 2:25 pm

        I wasn't certain of the answer, so I just made a batch of muffins without the shredded coconut and protein powder and they came out great. If you make it this way then the nutritional info changes to:
        NUTRITIONAL INFO: Calories 126 Fat 11g Protein 4g Carb 5g Fiber 2g Net Carbs 3g

        Reply
    9. Lauri says

      April 22, 2018 at 11:10 pm

      Is the protein powder necessary? What does it dfo?

      Reply
      • Emily says

        April 23, 2018 at 1:08 am

        Whey powder really improves the texture of the muffin.

        Reply
    10. Jr says

      April 22, 2018 at 7:11 pm

      You forgot to include the coconut in the mixing instructions, FYI 😉

      Reply
      • Emily says

        April 22, 2018 at 8:32 pm

        Thanks so much for catching that! I just fixed it.

        Reply
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    I'm Emily, the diabetic behind Resolution Eats. Many years ago, I made a New Year's resolution to switch to a low carb diet. It improved both my health and my outlook on life. Since then, I've come up with hundreds of Keto recipes for everything from soup to nuts. And this blog is a way for me to share the low carb love. Cheers!

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